0.0
without_OMAT_gene
AT1G50820.1
<html><body><title>AT1G50820.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u125082001000i/AT1G50820.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u125082001000i/AT1G50820.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u125082001000i/AT1G50820.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524679501000i">AT5G46795.1</a></td><td>0.872768</td><td>MSP2 (microspore-specific promoter 2)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u124489001000i">AT1G44890.1</a></td><td>0.858119</td><td>unknown protein</td><td>OMAT1P012700</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420307001000i">AT4G03070.1</a></td><td>0.842952</td><td>AOP1</td><td>OMAT4P001200</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220341001000i">AT2G03410.1</a></td><td>0.838918</td><td>Mo25 family protein</td><td>OMAT2P000690</td><td>-</td><td>OMAT2P100730</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520488501000i">AT5G04885.1</a></td><td>0.838817</td><td>glycosyl hydrolase family 3 protein</td><td>OMAT5P001520</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125124001000i">AT1G51240.1</a></td><td>0.838758</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522794401000i">AT5G27944.1</a></td><td>0.834046</td><td>sequence-specific DNA binding / transcription factor</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320133101000i">AT3G01331.1</a></td><td>0.829655</td><td>Encodes a ECA1 gametogenesis related family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322001001000i">AT3G20010.1</a></td><td>0.828077</td><td>SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein</td><td>OMAT3P007570</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421472301000i">AT4G14723.1</a></td><td>0.823747</td><td>FUNCTIONS IN: molecular_function unknown</td><td>OMAT4P003990</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422327001000i">AT4G23270.1</a></td><td>-0.803533</td><td>protein kinase family protein</td><td>OMAT4P007060</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524089001000i">AT5G40890.1</a></td><td>-0.796938</td><td>ATCLC-A (CHLORIDE CHANNEL A)</td><td>OMAT5P109700</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420286001000i">AT4G02860.1</a></td><td>-0.78624</td><td>catalytic</td><td>OMAT4P101000</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320129001000i">AT3G01290.1</a></td><td>-0.783706</td><td>band 7 family protein</td><td>OMAT3P100150</td><td>-</td><td>OMAT3P000150</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121829001000i">AT1G18290.1</a></td><td>-0.782716</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320472001000i">AT3G04720.1</a></td><td>-0.774553</td><td>PR4 (PATHOGENESIS-RELATED 4)</td><td>OMAT3P101510</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220167001000i">AT2G01670.1</a></td><td>-0.772818</td><td>atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17)</td><td>OMAT2P100280</td><td>-</td><td>OMAT2P000170</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223383002000i">AT2G33830.2</a></td><td>-0.770651</td><td>dormancy/auxin associated family protein</td><td>OMAT2P107420</td><td>-</td><td>OMAT2P008350</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422557001000i">AT4G25570.1</a></td><td>-0.767648</td><td>ACYB-2</td><td>OMAT4P106970</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221548001000i">AT2G15480.1</a></td><td>-0.763786</td><td>UGT73B5 (UDP-glucosyl transferase 73B5)</td><td>OMAT2P002050</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u125082001000i/AT1G50820.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>39/200</td><td>1.61</td><td>9.98e-04</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0006345</td><td>pollen tube</td><td>67/200</td><td>2.30</td><td>4.23e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>124/200</td><td>1.19</td><td>1.75e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>124/200</td><td>1.18</td><td>2.31e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>125/200</td><td>1.15</td><td>7.68e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0007605</td><td>androecium developmental stages</td><td>72/200</td><td>2.46</td><td>1.49e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>127/200</td><td>1.21</td><td>5.68e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>120/200</td><td>1.18</td><td>4.03e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>114/200</td><td>1.18</td><td>6.42e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>germinated</td><td>-</td><td>53/200</td><td>9.58</td><td>1.02e-37</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>pollen</td><td>-</td><td>62/200</td><td>6.95</td><td>5.05e-36</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>71/200</td><td>5.40</td><td>2.00e-34</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stage</td><td>-</td><td>79/200</td><td>4.08</td><td>3.80e-30</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>mature</td><td>-</td><td>53/200</td><td>5.93</td><td>2.72e-27</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>petal</td><td>-</td><td>57/200</td><td>3.91</td><td>2.45e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>58/200</td><td>3.84</td><td>2.56e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>57/200</td><td>3.88</td><td>3.49e-20</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>flower</td><td>-</td><td>41/200</td><td>5.37</td><td>1.29e-19</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>gametophyte</td><td>-</td><td>28/200</td><td>7.13</td><td>5.31e-17</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>whorl</td><td>-</td><td>18/200</td><td>7.69</td><td>3.29e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>globular</td><td>-</td><td>15/200</td><td>4.00</td><td>1.37e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>related</td><td>-</td><td>46/200</td><td>1.64</td><td>2.23e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>system</td><td>-</td><td>41/200</td><td>1.69</td><td>2.49e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>40/200</td><td>1.69</td><td>2.96e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>terminal</td><td>-</td><td>31/200</td><td>1.61</td><td>3.00e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>19/200</td><td>1.73</td><td>7.04e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[C]:Cellular component(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>